Trouble running FindConservedMarkers() after using CellSelector() in Seurat
0
0
Entering edit mode
2.8 years ago
Aaron ▴ 30

Hi all, I'm trying to use Seurat's FindConservedMarkers() to find the conserved markers for a population I created with the CellSelector() function. It hasn't been working unfortunately, saying "Error: Subscript out of bounds" - I have tried the FindConservedMarkers() function on other clusters and it appears to work fine. After using CellSelector(), do I have to rerun FindNeighbors() or RunPCA() etc. in order to run FindConservedMarkers()? Is the error possibly because the cell cluster is too small? (It's about 250 cells.) Any other guidance would be much appreciated.

FindConservedMarkers Seurat • 741 views
ADD COMMENT

Login before adding your answer.

Traffic: 1571 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6