Vep combined or single

Question

[sara]

I have mutltiple vcf files and in need to do vep, so is it better to make vep on one file at a time, which will result only vep txt file for each sample, or combine vcf files to one vep which will result, a txt and summary .html

and if the first solution is better (one file at a time), is there is a way to make summary.html for each file ?

[brunobsouzaa]

Personally, I prefer to use vep for one sample at a time, and, yes, you can create a summary file for each one of them. Just make sure you're not using the --no_stats flag.

[sara]

is there a command line for the summary ? or u mean when i run the vep it will automatically produce summary ?

[brunobsouzaa]

It will produce automatically!