Getting a negative values when calculating gene expression
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2.8 years ago
langziv ▴ 70

Hello.
When using EDGE-pro I'm getting negative counts and coverage values only for one of the genes. For instance, for one sample I got a coverage of -11564.5 and -168130 reads. These negative values are consistent for this gene throughout all the samples from a certain bacteria strain.
Do you have a suggestion or knowledge about why that might be the case?

RNA-seq EDGE-pro gene-expression • 377 views
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