Standard Error Bars for CV error to determine best K in Admixture
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2.8 years ago
Jennifer • 0

I am trying to figure out how to get the standard errors for the cross-validation errors estimates to determine the best K. Does anyone know the best way to do this? I can only find a point estimate in the log output file, and the manual mentions that the number in parentheses is the standard error of the estimate, but I don't see any number in parentheses? I also tried adding the bootstrapping flag (-B), but only see standard errors added to the .Q_se output file. I am not sure if I am missing something silly but let me know if you have any advice! Here is an image of the manual page

ADMIXTURE admixture • 530 views
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