from mutations to vcf

Question

[Anst]

Hello!

I have a table for each sample with 0 (mutation doesn't occur) and 1 (mutation occur). Is there is a way to transform this into vcf file?

Thanks

[Pierre Lindenbaum]

yes. use awk.

[Anst]

Could you tell me how, please?

[Pierre Lindenbaum]

sure, show me your data.

[Anst]

This is how the table looks like

CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 3488 3483 3477 3450 3380 3369 1261 3351 1369

some_chrom  1   A1G A   G   .   PASS    some_info   GT:CLADE    0   0   0   0   0   0   0   0   0

some_chrom  0   A0G A   G   .   PASS    some_info   GT:CLADE    0   0   0   0   0   0   0   0   0

some_chrom  0   G0A G   A   .   PASS    some_info   GT:CLADE    0   0   0   0   0   0   0   0   0

some_chrom  1   G1A G   A   .   PASS    some_info   GT:CLADE    0   0   0   0   0   0   0   0   0

some_chrom  1A,G1   G1A,G1A G   A   .   PASS    some_info   GT:CLADE    0   0   0   0   0   0   0   0   0