Entering edit mode
2.9 years ago
melissachua90
▴
70
I ran an IBD analysis using PLINK to identify any inconsistencies in parental genotypes using a p<.01 threshold.
Command:
./plink --file ped_final_re_MHC_mod --genome rel-check --min 0.01
The command generated a plink.genome file.
How do I use the information from plink.genome to answer:
How many paternal or maternal subjects have a p<.01 when compared to their offspring?
How many paternal or maternal subjects have p<.01 compared to each other?
