Trimmomatic Error

Question

[ahmer]

Hello I am using Bash shell in windows and have installed Trimmomatic using

sudo apt install trimmomatic
Reading package lists... Done 
Building dependency tree 
Reading state information... Done
trimmomatic is already the newest version (0.39+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 100 not upgraded.

But when I try to run commands it comes with error

module load trimmomatic or trimmomatic/0.39
module: command not found

java -jar trimmomatic-0.39.jar PE input_PY53_R1.fastq.gz input_PY53_R2.fastq.gz output_PY53_R1_paired.fq.gz output_PY53_R1_unpaired.fq.gz output_PY53_R2_paired.fq.gz output_PY53_R2_unpaired.fq.gz SLIDINGWINDOW:4:20 MINLEN:2 Error: Unable to access jarfile trimmomatic-0.39.jar

Urgent help will be really appreciated.

Best regards

[Pierre Lindenbaum]

apt install is unrelated to module . When you install such tool, no module is created.