How can I make this type of images in R-studio or do you know any software to make them easier?

Question

[josynan9]

Good afternoon , I have doubts about what program to use to be able to make an image similar to image "A". In the image a genome is represented, the red circles are the position where structures of interest are found. I thought to use R-studio but I'm still new to this program. I want to carry out with a gene and I have already listed the positions of these structures of interest. If someone would like to help me with this program or knows of a public software to do this, it would be very helpful. Thank you.

The imagen was taken from this article: https://www.frontiersin.org/articles/10.3389/fmicb.2021.798431/full

Answer 1

[i.sudbery]

Look into the packages Gviz and ggbio.

Answer 2

[amy__]

D and E can be made using "pheatmap"

[Dunois]

Adding to this comment:

B is just a pie chart (I think that's actually just a product of graphics::pie()in this composite image). C is a bar plot (also from graphics: graphics::barplot()).

Not quite sure how the authors composited everything together. They might have used cowplot or patchwork, but I have a feeling this particular multi-panel figure was probably thrown together in Microsoft PowerPoint (or LibreOffice Impress, if they were open source enthusiasts).