Entering edit mode
2.8 years ago
princy149
•
0
library(vegan) library(ape) library(dplyr) ps <- microbiome::transform(ps, "compositional") otu <- abundances(ps) meta <- meta(ps)
visualize the population density and highlight sample groups
p <- plot_landscape(ps, method="NMDS" , distance="bray", col="sample", size=3) print(p)