how can i join points (between correlated samples) in beta diversity NMDS plot or PCs plot
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2.8 years ago
princy149 • 0

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library(vegan) library(ape) library(dplyr) ps <- microbiome::transform(ps, "compositional") otu <- abundances(ps) meta <- meta(ps)

visualize the population density and highlight sample groups

p <- plot_landscape(ps, method="NMDS" , distance="bray", col="sample", size=3) print(p)

codes beta diversity microbiome NMDS • 534 views
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