Ligand Receptor Interaction Algorithm

Question

[fouerghi20]

Does anyone have personal experience with using cell-to-cell interaction algorithms and would be willing to recommend what they found to be the best algorithm? Currently looking into CellPhoneDB, CellChat, and CellTalker. Any personal recommendations would be greatly appreciated.

Answer 1

[abedkurdi10]

Hello fouerghi20, I recently used SingleCellSignalR R package from Bioconductor: https://www.bioconductor.org/packages/release/bioc/html/SingleCellSignalR.html