Coordinate from CpG cluster ID in UCSC

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2.8 years ago

Sasha • 0

Hi!

I've got CG cluster numbers (e.g. cg00095089) and am trying to find corresponding chromosomal coordinates and gene IDs using the UCSC genome browser's GENCODEV39 track with "knownGENE" as the table. When I try to define the region of interest using a CG cluster number, it says "couldn't locate." I'm not sure if I'm using the right table or really what's gone wrong. I'd really appreciate any help or guidance.

Thank you very much!

Sasha

Genome UCSC Numbers Cluster Browser CG • 787 views

ADD COMMENT • link 2.8 years ago by Sasha • 0

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Where does your CpG ID come from ? EPIC array or other ?

ADD REPLY • link 2.8 years ago by Basti ★ 2.0k

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It came from an Illumina HM450K methylation array.

ADD REPLY • link 2.8 years ago by Sasha • 0

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Thank you Basti! I found the HM450K manifest and the column headings.

ADD REPLY • link 2.8 years ago by Sasha • 0

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