Extract svtype from svaba

Question

[Adham]

Hi All,

I have a question for people familiar with sbava caller. I noticed that all structural variant types detected by this tool are considered as BND. Do you have an idea how to make the DEL, IND classifications appear in the vcf (I asked this question in the svaba github issues but given the response time I asked the question again here).

Note: I work on germline variants.

Thanks in advance