Low number of differentially expressed genes in scRNAseq
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2.8 years ago
Darya • 0

I generated a list of DE genes (p-value < 0.05 and |LFC| > 0), the result shows only 8 upregulated genes which I think is a low number. My question is, can this low number of DEGs between two conditions in scRNAseq represent anything? If yes, what?

DEgenes scRNAseq DE analysis • 669 views
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That is impossible to answer without more context on the experiment and the DE strategy you used.

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It depends obviously on multiple things for example the way reads are mapped and handled as well as the experiment design. As @ATpoint mentioned more information is needed to address your concern.

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