About Per base sequence content: Should I cut the former abnormal 10 bp?
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2.7 years ago
rsunam • 0

Here is the Per base sequence content part of my sample's fastqc report. It was marked 'fail'. enter image description here Will it influences my following analysis? Should I cut the first few abnormal bases during trimming?

sequence GC content Per base fastqc trimming • 895 views
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2.7 years ago
Papyrus ★ 3.0k

If this is RNA-seq see these previous answers.

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Even if this is not RNAseq then it should still be ok. Libraries that use tagmentation can also produce similar profile.

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thank you!

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