Is there a similar option to Diamond's --max-target-seqs in MMSeqs2?
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2.8 years ago
O.rka ▴ 740

Is there an option for the maximum number of target seqs (similar to --max-target-seqs in Diamond)?

I found this:

--max-seqs INT Maximum results per query sequence allowed to pass the prefilter (affects sensitivity) [300] but I don't think that does the same thing.

metagenomics diamond blastp alignment mmseqs2 • 417 views
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