Question

liftOver input file

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2.7 years ago

BenHu • 0

Hello, LiftOver can convert genome position from one genome assembly to another genome assembly. LiftOver takes as input .over.chain.gz. here is the content of hg38tohg19.over.chain.gz. Screen Shot 2022-03-03 at 9.40.15 AM

would you like to explain what each column means? Best,

between convertion references different • 1.1k views

ADD COMMENT • link 2.7 years ago by BenHu • 0

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I think you forgot to put the picture?

ADD REPLY • link 2.7 years ago by Medhat 9.8k

score 1 · Answer 1 · 2022-03-03

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2.7 years ago

Pierre Lindenbaum 164k

https://genome.ucsc.edu/goldenPath/help/chain.html

ADD COMMENT • link 2.7 years ago by Pierre Lindenbaum 164k

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I appreciate you. here is the screenshot of hg38ToHg19.over.chain, which looks different from https://genome.ucsc.edu/goldenPath/help/chain.html.

Are you familar with this format of hg38tohg19.over.chain?

enter image description here

ADD REPLY • link 2.7 years ago by BenHu • 0