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2.7 years ago
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Hi
I have this ROH report by plink to draw a manhattan plot.
I don't know how can I draw this plot and with which columns?
I see that each individual repeats around several times I don't know why? so how can I use this?
Please guide me if possible.
FID IID PHE CHR SNP1 SNP2 POS1 POS2 KB NSNP DENSITY PHOM PHET 3221 3221 110.012 1 M463 M533 20356120 23391450 3035.331 70 43.362 0.986 0.014 3221 3221 110.012 1 M2069 M2391 97112610 115102440 17989.831 309 58.22 1 0 3221 3221 110.012 1 M3181 M3242 154456300 156995880 2539.581 57 44.554 0.982 0.018 3221 3221 110.012 2 M3266 M5559 2680 111829800 111827.121 2223 50.305 1 0 3221 3221 110.012 9 M21968 M22023 74568430 76804570 2236.141 55 40.657 0.964 0.036 3221 3221 110.012 12 M26998 M28840 33200 86966370 86933.171 1797 48.377 1 0 3221 3221 110.012 18 M37244 M38109 43400 41005720 40962.321 842 48.649 1 0 3221 3221 110.012 29 M50296 M51249 3040460 50894740 47854.281 926 51.678 1 0 3222 3222 106.883 1 M551 M637 24545970 27641490 3095.521 87 35.581 0.989 0.011 3222 3222 106.883 1 M2588 M3265 125045780 157965150 32919.371 648 50.801 0.998 0.002 3222 3222 106.883 3 M6536 M6589 22928730 25451370 2522.641 53 47.597 0.981 0.019 3222 3222 106.883 8 M18294 M18994 4601670 38536980 33935.311 682 49.759 1 0 3222 3222 106.883 9 M22447 M22554 95920820 101498070 5577.251 108 51.641 1 0 3222 3222 106.883 10 M22805 M23027 9955050 19778650 9823.601 217 45.27 0.995 0.005 3222 3222 106.883 21 M41603 M42358 9635580 48544810 38909.231 727 53.52 0.999 0.001 3222 3222 106.883 28 M49242 M50219 8540 45884440 45875.901 950 48.29 1 0 3223 3223 118.295 2 M3311 M3484 2572490 11240610 8668.121 172 50.396 1 0 3223 3223 118.295 3 M6536 M6589 22928730 25451370 2522.641 53 47.597 0.981 0.019 3223 3223 118.295 5 M13158 M13361 95593650 104509230 8915.581 192 46.435 0.995 0.005 3223 3223 118.295 6 M14748 M15448 54184500 90701650 36517.151 678 53.86 1 0
