Entering edit mode
2.7 years ago
Dan
▴
180
Hello,
I used scanpy.pp.normalize_total
function in SCANPY
package to normalize the library to the same size. (https://scanpy.readthedocs.io/en/stable/generated/scanpy.pp.normalize_total.html#scanpy.pp.normalize_total)
I found the target_sum
is different among kinds of literatures, some used 10K
, some used CPM
, and very rarely used median library size
. I am not sure how to choose the library normalization size?
Thanks a lot