Interpreting the Jackstraw plot of Seurat
0
1
Entering edit mode
2.8 years ago

I am having a hard time understanding the Jackstraw plot and how it is made. A discussion on GitHub here and on StackExchange here give some insights but I still have a few questions: enter image description here

  1. What does the axis of the Jackstraw plot represent. What is the meaning of Theoretical [runif(1000)] and empirical.
  2. What does the slope of the Jackstraw plot represents? What does each dot on that slope represent?
  3. Is there a detailed yet simplistic step by step explanation on how the P values are calculated starting from PCA loadings?
genomics seurat plot scrnaseq • 1.0k views
ADD COMMENT

Login before adding your answer.

Traffic: 2025 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6