How do I download annotated cancer image datasets?

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2.8 years ago

melissachua90 ▴ 70

I want to download an entire dataset of annotated whole-slide images for colorectal cancer. How do I download the dataset from websites such as Cancer Digital Slide Archive (https://cancer.digitalslidearchive.org/ )?

image dataset annotation • 788 views

ADD COMMENT • link updated 2.8 years ago by GenoMax 148k • written 2.8 years ago by melissachua90 ▴ 70

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Images appear to be available via GDC data portal.

This LINK should take you there directly. If not go to the main GDC site and look for a banner with a link at the top to take you to images.

images

ADD REPLY • link 2.8 years ago by GenoMax 148k

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But GDC data is not annotated.

ADD REPLY • link 2.8 years ago by melissachua90 ▴ 70

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You will have to email the person listed on site you originally linked to see if annotated images are available.

ADD REPLY • link 2.8 years ago by GenoMax 148k

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