Question

The meaning of 'bwa-mem2 index' output

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2.7 years ago

ziyan • 0

I have used bwa-mem2 index UCSC hg19.fa.gz file, but I have no idea about the output of this command. Does anyone know it? Thanks a lot! the output of 'bwa-mem2 index'

bwa-mem2 • 1.0k views

ADD COMMENT • link updated 2.7 years ago by ATpoint 85k • written 2.7 years ago by ziyan • 0

score 2 · Answer 1 · 2022-03-10

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2.7 years ago

ATpoint 85k

Others may explain it, but I assure you that for the end user it does not matter. Just run the alignment and proceed with your analysis. The relevant output is the index files, not this stats printout.

ADD COMMENT • link 2.7 years ago by ATpoint 85k

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OK, thank you! I just want to know more about the tool to optimize my resource usage.

ADD REPLY • link 2.7 years ago by ziyan • 0

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I doubt that any index stats will help you with that. Don't overthink it, just run the analysis and you will see what memory usage it has.

ADD REPLY • link 2.7 years ago by ATpoint 85k