Can I download a partial database or delete subdirectories from an existing BUSCO v5 database?
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2.8 years ago
O.rka ▴ 740

I'm in the process of downloading BUSCO databases right now but I think it's a bit overkill for my purposes.

What I plan to do is the following:

  1. Use BUSCO as a wrapper for MetaEuk to do gene calls on a eukaryotic assembly
  2. Use BUSCO to tell me completeness/contamination for eukaryotic genome

I only suspect to encounter fungi and protists but the database is downloading lots of higher eukarya including carnivora which I do not expect to assemble out from short read metagenomes.

Links out:

metagenomics metatranscriptomics annotation • 581 views
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In hindsight, just use online mode. It's way better.

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