GVCF error

Question

[aebrahimi58]

Hello,

I used GATK/ 3 to combine multiple vcf files in the past, but it is no longer working. GenomeAnalysisTK -at 8 -T GenotypeGVCFs

Now, I tried to use this command to combine multiple vcf files.

gatk CombineGVCFs \

Please let me know if the CombineGVCFs do the same thing as the past version. Thanks.

[Pierre Lindenbaum]

some options changed, like -o and -O , read the documentation.