IGV Gene function from GFF3 files

Blog:IGV Gene function from GFF3 files

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2.7 years ago

Vincent ▴ 20

Hi, I'm using IGV to walk trought GFF3 Gene file from strawberry and I was wondering how can I find gene function? I have a strange name like Fxa5Bg123456 and a position but that name doesn't return anything on the web and I can't find what it does in the strawberry.

Thanks for your help!

Vincent

IGV Gene GFF3 • 551 views

ADD COMMENT • link 2.7 years ago by Vincent ▴ 20

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how about grep-ping the gff3 file for Fxa5Bg123456 and see if there is another information available ?

ADD REPLY • link 2.7 years ago by Pierre Lindenbaum 164k

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I found out that on rosebreed website you are able to see gene. They have different name but position are the same and i'm gonna find how to find function.

https://www.rosaceae.org/jbrowse/index.html?data=data%2Ffragaria%2Ffxananassa_v1.0&loc=Fvb5-2%3A11924391..11942974&tracks=DNA%2CFragaria_x_ananassa_v1.a2_gene%2CFxa_v1_gene&highlight=

ADD REPLY • link 2.7 years ago by Vincent ▴ 20

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