Entering edit mode
2.7 years ago
dikisakye
•
0
I have performed denovo assembly on cryptococcus neoformans genomes from multiple samples. I now have the contig files for these assemblies and would want to compute the quality metrics using quast. I want to create a script that loops over each contig file to compute the metrics and puts the outputs all results into a separate results directory. Can someone guide me on how to do this?. This is my directory structure:
Samples
|
+-- sample1
| |
| +-- sample1_contigs.fa
|
+-- sample2
| |
| +-- sample2_contigs.fa
|
|
+-- sample3
| |
| +--sample3_contigs.fa
|
+-- sample4 etc