SNP annotation for de novo transcriptome data

Question

[nasreenbano91]

I have list of SNP for de novo transcriptome data (plant) . I would like to know the tools to annotate the these SNPs without using the reference genome.

I will appreciate if somebody suggests appropriate tool for this purpose..

Many thanks in advance

[poecile.pal]

Dear nasreenbano91,

Could you please tell me if you have managed to find a suitable tool for this purpose? I faced the same problem. Thank you very much in advance!