Question

Data Mining - DisGeNET

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2.8 years ago

phoenix.sum13 ▴ 90

Hi, I have a long list of genes and I would like to extract all the SNPs for each gene (with their SNP ID) from the DisGeNET database. How can I do that?

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Mining SNP Data Disgenet • 1.1k views

ADD COMMENT • link 2.7 years ago by phoenix.sum13 ▴ 90

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Is "Data Mining" the best title you could come up with to describe this problem? Also, have you looked through the API and Downloads sections? Those are meant to facilitate bulk queries and accessing downloadable datasets.

ADD REPLY • link 2.8 years ago by Ram 44k

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Apologies. I agree, it could have been a bit more specific/descriptive.

ADD REPLY • link 2.8 years ago by phoenix.sum13 ▴ 90

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You can always edit it now so people with a similar problem will be able to find your post in the future.

ADD REPLY • link 2.8 years ago by Ram 44k

score 1 · Answer 1 · 2022-03-24

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2.8 years ago

mti193 ▴ 10

The DisGeNET has an 'API' section which will help you out. It also has 2 example scripts, a Python and a Rscript which gives an example of how to access the database.