Each Unique variant counting as 1
0
0
Entering edit mode
2.7 years ago

How to get the unique variants in all 120 bgzip and tabix indexed vcf files using bcf tools ? Each unique variant should be counted as 1 across all samples. After merging all unique variants into a single vcf file, how to rename the chromosome arabic numbers into roman numbers using bcf tools ? Thanks.

bcf variants • 567 views
ADD COMMENT
0
Entering edit mode

? Each unique variant should be counted as 1 across all samples

Get Unique variants (SNPs and Indels) using bcf tools

how to rename the chromosome arabic numbers into roman numbers using bcf tools

Replacing the Chr names and position notions in vcf

ADD REPLY

Login before adding your answer.

Traffic: 1604 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6