downlaod the file of "vdj_v1_mm_balbc_pbmc.zip"

Question

[yueli7]

Hello,

I tried to using "Single cell VDJ immunoassay using Seurat'. So I followed the website: https://programmersought.com/article/73676084536/.

I tried to download the demo data"vdj_v1_mm_balbc_pbmc.zip".

I went to https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_mm_balbc_pbmc_5gex.

Where I cam download the data "vdj_v1_mm_balbc_pbmc.zip"?

Thank you in advance for your great help!

Best,

Yue

Answer 1

[GenoMax]

You need to register (when you reach the site first time). Once you do that you will be taken to the page that has the download links.

[yueli7]

Hello GenoMax,

I have already registered in the 10xgenomics website.

My question is which file is "vdj_v1_mm_balbc_pbmc.zip"?

Thank you in advance for your great help!

Best,

Yue

[GenoMax]

If you are looking for fastq data then it is in tar compressed format. There is no zip file as far as I can see. Tutorial you linked above seems to be referencing a private download that may have been for that specific workshop.

[yueli7]

Hello GenoMax,

Thank you so much for your quick response!

Thank you again!

Best,

Yue

1. vdj_v1_mm_balbc_pbmc_5gex_filtered_feature_bc_matrix.h5, https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_mm_balbc_pbmc_5gex, Feature / cell matrix HDF5(filtered).

1. vdj_v1_mm_balbc_pbmc_t_filtered_contig_annotations.csv, vdj_v1_mm_balbc_pbmc_t_clonotypes.csv, https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_mm_balbc_pbmc_t, Clonotype info (CSV), Filtered contig annotations (CSV).

2. vdj_v1_mm_balbc_pbmc_b_filtered_contig_annotations.csv, vdj_v1_mm_balbc_pbmc_b_clonotypes.csv https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_mm_balbc_pbmc_b, Clonotype info (CSV), Filtered contig annotations (CSV).