apt-format-result, where is the --annotation-file?

Question

[barroyo]

Hi everyone!

I want to create a PLINK file from the axiom analysed batches using this script:

apt-format-result --calls-file <file> --annotation-file <file> --export-plinkt-file

My calls-file was generated in step 7 of the APT software. However, I can't find any annotation-file (or any *.db file). Is this an output from one of the APT steps? or is this a file provided by APT?

Hope you can help me resolve this.

Kind regards, B

[Kevin Blighe]

Cross-posted: https://support.bioconductor.org/p/9143017/