identify DMR with MethylKit

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2.7 years ago

sabin ▴ 50

Hi, I'm using the R package MethylKit and its function "calculateDiffMeth" to identify differentially methylated regions. However, the output only returns differentially methylated loci. How can i get regions?

Thanks in advance!!

r methylation methylkit regions dmr • 1.6k views

ADD COMMENT • link 2.7 years ago by sabin ▴ 50

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https://www.bioconductor.org/packages/release/bioc/vignettes/methylKit/inst/doc/methylKit.html#35_Tiling_windows_analysis

ADD REPLY • link 2.7 years ago by ATpoint 85k

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thank you!! that's exactly why i needed

ADD REPLY • link 2.7 years ago by sabin ▴ 50

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