Entering edit mode
2.7 years ago
Hyper_Odin
▴
320
vcf-validator gives out an error.
Broken VCF header, no column names?
at /usr/share/perl5/Vcf.pm line 172, <__ANONIO__> line 2.
Vcf::throw(Vcf4_2=HASH(0x7fffc55e6c70), "Broken VCF header, no column names?") called at /usr/share/perl5/Vcf.pm line 867
VcfReader::_read_column_names(Vcf4_2=HASH(0x7fffc55e6c70)) called at /usr/share/perl5/Vcf.pm line 602
VcfReader::parse_header(Vcf4_2=HASH(0x7fffc55e6c70)) called at /usr/share/perl5/Vcf.pm line 2557
VcfReader::run_validation(Vcf4_2=HASH(0x7fffc55e6c70)) called at /usr/bin/vcf-validator line 60
main::do_validation(HASH(0x7fffc55b2470)) called at /usr/bin/vcf-validator line 14
I have tried to bgzip and tabix the files as per previous posts, but nothing helps. Please Help!