Is there a genetic map with centimorgan distance of all SNPs hg19

Question

[Giulia.cosenza]

I have a list of 5000 snps and I want to find the frequency of recombination between them. Is there a genetic map with centimorgan distance of all SNPs hg19?

[Kevin Blighe]

The standard genetic map used for imputation may be what you want: https://mathgen.stats.ox.ac.uk/impute/1000GP_Phase3.html

[Giulia.cosenza]

But what if there is not the position of one of my snps in the 1000G_genomic_map_file? How can I calculate is centimorgan distance?

Let's say I have to calculate the distance in centimorgan between this two snps:

chr1:4114126 
chr1:4158955

And in the map file I only have this positions and centimorgan:

chr1:2831369    5.443888 
chr1:4158955    9.838158

Is there a way to calculate the distance between the 2 snps?

[Kevin Blighe]

User has created a new question, here: Centimorgan Distance map file

[Ram]

I've deleted that post. User can continue their thread here.

[Giulia.cosenza]

thank you! ;)