Is there a genetic map with centimorgan distance of all SNPs hg19

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2.7 years ago

Giulia.cosenza ▴ 110

I have a list of 5000 snps and I want to find the frequency of recombination between them. Is there a genetic map with centimorgan distance of all SNPs hg19?

snps recombination map centimorgan • 1.1k views

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 2.7 years ago by Giulia.cosenza ▴ 110

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The standard genetic map used for imputation may be what you want: https://mathgen.stats.ox.ac.uk/impute/1000GP_Phase3.html

ADD REPLY • link 2.7 years ago by Kevin Blighe 88k

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But what if there is not the position of one of my snps in the 1000G_genomic_map_file? How can I calculate is centimorgan distance?

Let's say I have to calculate the distance in centimorgan between this two snps:

chr1:4114126 
chr1:4158955

And in the map file I only have this positions and centimorgan:

chr1:2831369    5.443888 
chr1:4158955    9.838158

Is there a way to calculate the distance between the 2 snps?

ADD REPLY • link updated 2.7 years ago by Ram 44k • written 2.7 years ago by Giulia.cosenza ▴ 110

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User has created a new question, here: Centimorgan Distance map file

ADD REPLY • link 2.7 years ago by Kevin Blighe 88k

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I've deleted that post. User can continue their thread here.

ADD REPLY • link 2.7 years ago by Ram 44k

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thank you! ;)

ADD REPLY • link 2.7 years ago by Giulia.cosenza ▴ 110

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