Extact SNPs ID's and their Values with IID, Additive and dominance components
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2.6 years ago
Raju • 0

I'm dealing with GWAS data and I have 2M records of the .bed file, I'm New to P-link, Can anyone please help me with the Plink command which can Extract all SNPs Id's and their Values with IID, Additive, and dominance components:

Desired Output

 ID PAT MAT SEX PHENOTYPE kgp11274425_A kgp11274425_HET kgp5732633_T kgp5732633_HET

 45   1 0 0 1  1  1 1  G G ....
 281  2 0 0 2  1  0 0  A G ...
 4    3 0 0 1  1  1 1  A G ...
 65   4 0 0 2  1  2 1  A A ...
 .
 .
plink • 391 views
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