QC of UKB BGEN format data

Question

[Salahuddin]

Hi , I have a question. While PRScoring with BGEN imputed UKB data in PRSice-2 program, I only did INFO, MAF and Geno filtering as QC. Is it enough QC steps for UKB imputed BGEN data? From 'Tutorial: a guide to performing polygenic risk score analyses'paper I see additional recommendation of QC. 'Genotyping rate >0.99' and 'Hardy-Weinberg Equilibrium P >1 × 10−6'. How to apply that while working with UKB BGEN data? And if not needed, can i get a reference to that. Thanks

[Pappu]

I think UK Biobank already provides QC of the data. You can check their help pages.