conversion of fasta file format to tabular format

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2.7 years ago

kaisakaiho73847 • 0

Hi, I have my fasta file of RNA sequence which I wanted to identify motif via MEME web-based tool, however I had some issue with the sequence identifiers warned as too long during the file submission.

Therefore, I wanted to edit those sequence identifiers list after converting to tabular format to make it easier as I have to deal with more than 1000 identifiers.

Kindly share the command line used for conversion of the format.

Thank you.

fasta tabular • 893 views

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 2.7 years ago by kaisakaiho73847 • 0

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Multiline Fasta To Single Line Fasta

ADD REPLY • link 2.7 years ago by Pierre Lindenbaum 164k

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i wanted to edit those sequence identifiers list after converting to tabular format to make it easier as i have to deal with more than 1000 identifiers.

Post an example input and expected output.

ADD REPLY • link 2.7 years ago by cpad0112 21k

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Biopython SeqIO module has option to convert fasta to tabular format: https://biopython.org/wiki/SeqIO

ADD REPLY • link 2.7 years ago by Pappu ★ 2.1k

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