Dataset or repository to look for RNA seq datasets using ribosomal depletion for liver cancer data.

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2.7 years ago

aranyak111 • 0

I am interested in the gene MIR122HG, the precusor RNA of miRNA-122. I want to know whether there is a database , repository or important publications for which I can get RNa seq datasets prepared by ribosomal depletion method? Upon obtaining the data I will like to generate generate the FPKM of normal and liver cancer sample of MIR122HG.

I have found one paper , howver it talks about only normal tissues across different datasets Choy, J.Y., Boon, P.L., Bertin, N. and Fullwood, M.J., 2015. A resource of ribosomal RNA-depleted RNA-Seq data from different normal adult and fetal human tissues. Scientific data, 2(1), pp.1-7.

Any information will be helpful for resource.

RNA-Seq • 518 views

ADD COMMENT • link updated 2.7 years ago by K.patel5 ▴ 150 • written 2.7 years ago by aranyak111 • 0