How to generate Metaassembly for a genome?
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2.6 years ago
sunnykevin97 ▴ 990

Hi,

I had a 7 different genomes (fish) with 40X genome coverage, sequenced by Nextseq-500.

  1. I used 3 de novo assemblers (Abyss(21,33,44,77), Spades(21,33,44,77), Velvet(31)) for assembly with different kmers.

  2. Removed the redundant contigs using CD-HIT.

  3. Can I used the Metassembler for merging the denovo assemblies ?

Suggestions.

genome gene • 518 views
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