Question

trimming adapter sequences

0

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2.6 years ago

biology_inform ▴ 50

enter image description here Hi all, I have dataset from GEO database and I dont know the adapter sequences which were used. When I run fastqc I get results which I attached as image. I cannot find the adaptor sequences how can i find it ? platform illumina nextseq 500

adapter fastqc rnaseq • 604 views

ADD COMMENT • link updated 2.6 years ago by Istvan Albert 102k • written 2.6 years ago by biology_inform ▴ 50

score 1 · Answer 1 · 2022-05-05

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2.6 years ago

Istvan Albert 102k

It is the Illumina Universal Adapter

use the following sequence

>adapter
AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC

ADD COMMENT • link 2.6 years ago by Istvan Albert 102k