igv and bam file
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2.5 years ago

Hi all,

I have a quick and probably easy question. I am new to igv and I want to find the number of alignments in the bam file which aligned to genome. (To be clear I am trying to find number of alignments in the red box which indicated in the image)

Thanks in advance :)

enter image description here
igv rna-seq bam • 576 views
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Have you tried bedtools?

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nope i didnt. Which function should I use?

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