Best tool for genotype - phenotype correlation

Question

[storm1907]

Hello,

I need to perform genotype - phenotype correlation analysis. I know PLINK could be used for such purpose, but with PLINK many file preparation steps need to be done before running the actual step. I have VEP annotated VCFs.

Maybe other good options can be suggested.

Thank you!

Answer 1

[ibomsolomon]

You can use Meta-R https://data.cimmyt.org/dataset.xhtml?persistentId=hdl:11529/10201