Genome Reference Consortium Human Build - Transcriptome Size Query

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2.6 years ago

Oligo96 • 0

Hi All,

I was wondering where I might find the approximate transcriptome size of the latest Genome Reference Consortium Human Build (GRCh38.p14)?

https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.40

Thanks for your help!

GRC • 963 views

ADD COMMENT • link updated 20 months ago by Ram 44k • written 2.6 years ago by Oligo96 • 0

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This page will be a good starting point: https://www.ncbi.nlm.nih.gov/data-hub/taxonomy/9606/

ADD REPLY • link 2.6 years ago by vkkodali_ncbi ★ 3.8k

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Thank you!

ADD REPLY • link 2.6 years ago by Oligo96 • 0

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You don't have to estimate it. Download the latest and most up-to-date transcripome annotation for human, e.g. from GENCODE https://www.gencodegenes.org/human/ and then simply count what you would like to know, be it number of genes, total bases, number of transcripts, exons, you name it.

ADD REPLY • link 2.6 years ago by ATpoint 85k

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Thanks! Do you recommended any resources that will enable me to explore and pull readouts from GTF files?

ADD REPLY • link 2.6 years ago by Oligo96 • 0

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