Core/pan genome pipeline
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2.5 years ago
schulpen_91 ▴ 30

Good day. I wish to build a core- and pan-genome out of 30 closely related fungal strains but I do not know where to start.

Starting after sequence assembly, which software and steps would you recommend?

In addition, what is a good way to find mitochondrial DNA in assembly data?

Many thanks!

pangenome coregenome mtdna ngs Nanopore • 385 views
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