How to use vcfuniq from vcflib?

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2.5 years ago

kshaffman • 0

Hi, I am trying to use vcfuniq from the vcflib library. It is used to find unique mutations between two VCF files. I cannot figure out how to use this program. I know it is a command-line program, but I just do not know what the commands for this program are and the documentation is kind of lacking. I am trying to use this program through a Linux terminal. I am not very familiar with running command-line programs, so sorry if this is an obvious question.

Here is the link to the GitHub page for this program. https://github.com/vcflib/vcflib

vcf • 950 views

ADD COMMENT • link updated 20 months ago by Ram 44k • written 2.5 years ago by kshaffman • 0

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It is used to find unique mutations between two VCF files.

use bcftools isec

https://samtools.github.io/bcftools/bcftools.html#isec

ADD REPLY • link 2.5 years ago by Pierre Lindenbaum 164k

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Hi Pierre,

Could you please give me more information on how I could use bcftools isec to accomplish my goal?

ADD REPLY • link 2.5 years ago by kshaffman • 0

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