Syndip benchmark dataset
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2.5 years ago
mera El ▴ 10

Hey, I'm new in bioinformatics. I want to load the syndip dataset with the variants ( snps & indels).

This is the github page of syndip dataset : https://github.com/lh3/CHM-eval,

I want to have the vcf file of syndip data that contain the truth variants, but i don't really undrestood wich one is the data in this directory : https://github.com/lh3/CHM-eval/releases. So In the latest version, we have a file named rep2.37.broad.hc.raw.vcf.gz, is this the truth dataset ? and we have also CHM-evalkit-20180222.tar that contain 3 vcf files and other files bed ... .

How can i get the syndip dataset ?

Thank u for your help

CHM1 CHM13 variants syndip • 383 views
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