Entering edit mode
2.5 years ago
elb
▴
260
Hi guys, I would like to (box)plot the gene expression (unscaled data) of a list of genes using my desired order of clusters. Is there a fast way to do it?
Thank you in advance
I don't know about a box plot, but there are several other visualization options such as violin plots using
VlnPlot
. Setfeatures
to the vector of genes you want to visualize,slot
tocount
for unscaled, untransformed gene counts, andidents
to specify which clusters (i think).https://satijalab.org/seurat/reference/vlnplot
https://satijalab.org/seurat/articles/visualization_vignette.html