Software to draw protein domains of proteins

Question

[lukhanyomakhabane]

Can anyone help me how to draw domains of proteins? which software i can use? I am looking for a tool that can plot a protein domain structure (similar to how it is done in Pfam or Smart) .

[lieven.sterck]

if you run your proteins through InterproScan you will get be default an image as output which shows the location of the domains on your input protein.

Answer 1

[Jean-Karim Heriche]

Have a look at the drawProteins package on Bioconductor or at the seqvisr package on GitHub.

Answer 2

[Mensur Dlakic]

If you want Pfam-like domain representations, their site has as option to do it. One has to enter domain boundaries, colors, the style and simply click "Generate graphic."

https://pfam.xfam.org/generate_graphic

ProSIte also does a nice job:

https://prosite.expasy.org/mydomains

Answer 3

[cmdcolin]

tools mentioned by other users are great, a couple more tools here https://cmdcolin.github.io/awesome-genome-visualization/?latest=true&tag=Protein

including https://github.com/joiningdata/lollipops

and http://ibs.biocuckoo.org/