How to provide read1 and read2 fastq files from two lanes to kallisto | bustools?

Question

[eager_underdog]

Hi All,

I was wondering how should I provide 10X read1 and read2 fastq files from both lanes to the kb count function of kallisto | bustools?

Thanks very much!

Answer 1

[rpolicastro]

It would just be space separated lane pairs. L001_R1_001.fastq.gz L001_R2_001.fastq.gz L002_R1_001.fastq.gz L002_R2_001.fastq.gz, etc.

[eager_underdog]

Thank you!