UTR from gff format

Question

[saifulislam99121]

Hello, I need to extract UTR from a gff file. Which tool should I use?

Thank you

[dthorbur]

Have you tried anything so far? I would include what you have tried prior to asking in future posts.

You could use grep to take lines with "UTR" in them.

Alternatively, you could use R using the rtracklayer package to read in the gff, and then subset using the type field.

Answer 1

[Michael]

While the task is not always trivial, the minimum requirement for posting would be to search for existing questions. Now, there are several good answers already posted, check out Similar posts on the right. Therefore, this question is a duplicate.

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